Data Sources

CEID now maintains a public repository of datasets used in our COVID-19 projects. The datasets in the repository were compiled by members of the CEID COVID-19 working group. The data have been formated to be used โ€˜as-isโ€™ and are updated often. Data sets were either created from html scraping or manually entered. In the case of the automated web scraping, the raw data and scripts are included.

Data are publicly available here:

GitHub repository GitHub repository

China data

  • China_casedata
  • China_TA: Travel advisories or restrictions within China.
  • Hubei_Evacuation_Repatriation: Reports of evacuations from Hubei province.

US data

  • UScases_by_state_wikipedia.csv: Number of new cases in a state by day.
  • USfatalities_by_state_wikipedia.csv: Number of new case fatalities in a state by day.
  • us-state-intervention-data/stateInterventionTimeSeries.csv: Reshaped version of longFormStateInterventions.csv that includes the intervention status of all US states on each date since the beginning of the outbreak. Updated daily.
  • us-state-intervention-data/longFormStateInterventions.csv: Running summary of interventions at the state level taken from reports and wikipedia

State of Georgia data

  • ga-county-intervention-data/countyInterventionTimeSeries.csv: Reshaped version of longFormStateInterventions.csv that includes the intervention status of all US states on each date since the beginning of the outbreak. Updated daily.
  • ga-county-intervention-data/longFormCountyInterventions.csv: Running summary of interventions at the state level taken from reports and wikipedia

Global data

  • worldCases.csv: Number of new cases in a country by day.
  • Internation_TA: Travel advisories announced by county.
  • Global Health Security Index: Index of epidemic preparedness and underlying data
  • Epidemiological characteristics of COVID-19 and other zoonotics
  • Canada COVID-19 Case Data: Includes cases, fatalities, recovered, and tested for Canada

Legacy Data

Data resources used initually by the CEID Coronavirus Working Group include:

Timeline of key events and case notifications by country | Google sheet, updated daily, maintainer: CEID
Case notifications in China by province | Google sheet, updated daily, maintainer: CEID
Case notifications in China by prefecture | csv, updated daily, maintainer: CEID
First date of infection for Chinese prefectures | csv, updated daily, maintainer: CEID
Interventions in China by prefecture | Google sheet, updated daily, maintainer: CEID
Travel advisories | Google sheet, updated daily, maintainer: CEID
Case notifications in the US by state | Google sheet, updated daily, maintainer: CEID